PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G211600.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Nin-like
Protein Properties Length: 273aa    MW: 30655.3 Da    PI: 10.1949
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G211600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.7e-26203252352
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl
  Sevir.7G211600.3.p 203 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 252
                         689*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.633187272IPR003035RWP-RK domain
PfamPF020421.1E-21204252IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDMDAAVSTL TALSIFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWVER QFVLSLSVPP  60
CREVAVPAAS PRILMAGWRG RPVFREGQTV GTWRCIVAFD SVAAVKPSSP PPPVLSPLVN  120
PQLECLPNLY KDLQKVFQFQ KVEKVPRRVL RDAKEQPIHS GEQEKTSDEA DSSGSDSDGD  180
TQSDKELAPS VQKQPRANRK HIDSITLVEI AQYFHLPIRE ASKTLKIGVS ILKRKCRKYG  240
IPRWPHRKIK SLDSLIQDLE VNLTVHSISL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976506.10.0PREDICTED: protein RKD5
TrEMBLK3Y9E50.0K3Y9E5_SETIT; Uncharacterized protein
STRINGSi010837m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.13e-30RWP-RK domain-containing protein